General

I suggest you ...

You've used all your votes and won't be able to post a new idea, but you can still search and comment on existing ideas.

There are two ways to get more votes:

  • When an admin closes an idea you've voted on, you'll get your votes back from that idea.
  • You can remove your votes from an open idea you support.
  • To see ideas you have already voted on, select the "My feedback" filter and select "My open ideas".
(thinking…)

Enter your idea and we'll search to see if someone has already suggested it.

If a similar idea already exists, you can support and comment on it.

If it doesn't exist, you can post your idea so others can support it.

Enter your idea and we'll search to see if someone has already suggested it.

  1. Just to report that the browser seems to be broken now. The genome is not displayed

    1 vote
    Vote
    Sign in
    Check!
    (thinking…)
    Reset
    or sign in with
    • facebook
    • google
      Password icon
      Forgot password?
      Create a password
      Signed in as (Sign out)
      Close
      Close
      You have left! (?) (thinking…)
      0 comments  ·  Admin →

    • Add ability to add tracks containing custom data in the form of boxplots, scatter plots, etc

      1 vote
      Vote
      Sign in
      Check!
      (thinking…)
      Reset
      or sign in with
      • facebook
      • google
        Password icon
        Forgot password?
        Create a password
        Signed in as (Sign out)
        Close
        Close
        You have left! (?) (thinking…)
        0 comments  ·  Admin →

      • Installing ChromoZoom on my own server

        I was trying to installing ChromoZoom on debian server. It went very smoothly following the README.

        I vagranted up a VM (chrome-1) and downloaded the hg19 track. I think It should be able to show on https://localhost:8080 as well. However, it was totally an empty website. I couldn't find any track to use.

        How could I do.

        Thanks!

        --
        WM

        1 vote
        Vote
        Sign in
        Check!
        (thinking…)
        Reset
        or sign in with
        • facebook
        • google
          Password icon
          Forgot password?
          Create a password
          Signed in as (Sign out)
          Close
          Close
          You have left! (?) (thinking…)
          0 comments  ·  Admin →

        • Personal Genome SNP format

          Could the ucsc "Personal Genome SNP format" be added ? It is slightly different from the bed format and would be useful to view personal genomes. Thanks

          1 vote
          Vote
          Sign in
          Check!
          (thinking…)
          Reset
          or sign in with
          • facebook
          • google
            Password icon
            Forgot password?
            Create a password
            Signed in as (Sign out)
            Close
            Close
            You have left! (?) (thinking…)
            0 comments  ·  Admin →

          • Does the windowing function work?

            Hi Support,

            What is windowing function? It seems to me, the windowing function doesn't work. Can you make sure it?

            I guess the windowing function is a normalization term based on maxmal/mean/minimal value of reads. Is it right?

            Thanks.

            1 vote
            Vote
            Sign in
            Check!
            (thinking…)
            Reset
            or sign in with
            • facebook
            • google
              Password icon
              Forgot password?
              Create a password
              Signed in as (Sign out)
              Close
              Close
              You have left! (?) (thinking…)
              1 comment  ·  Admin →

            • Add other organisms?

              It would be great if we can load tracks for other organisms like Drosophila to this server!

              4 votes
              Vote
              Sign in
              Check!
              (thinking…)
              Reset
              or sign in with
              • facebook
              • google
                Password icon
                Forgot password?
                Create a password
                Signed in as (Sign out)
                Close
                Close
                You have left! (?) (thinking…)
                2 comments  ·  Admin →

              • Provide a mechanism to save a session to collaborate with other people

                Implement the Session-style capability present in the UCSC genome browser...
                If storage is of concern (this could be avoided by allowing the user to login with online storage system credentials and saving the session there) - related to my other feedback suggestion )https://chromozoom.uservoice.com/forums/158554-general/suggestions/3891926-provide-dropbox-and-other-online-drive-storage-sys)

                3 votes
                Vote
                Sign in
                Check!
                (thinking…)
                Reset
                or sign in with
                • facebook
                • google
                  Password icon
                  Forgot password?
                  Create a password
                  Signed in as (Sign out)
                  Close
                  Close
                  You have left! (?) (thinking…)
                  1 comment  ·  Admin →
                  under review  ·  AdminTed Pak (ChromoZoom dev, chromozoom) responded

                  I’m trying to think about the best way to do this. Is there any way that it can already be done using the “Link to this view:” link, assuming all your files being loaded from URLs and not your computer? Our main issue with saving the tracks themselves is that we are concerned we will rapidly run out of space without per-user quotas, which will require a lot of support overhead.

                • Provide Dropbox and other online drive storage systems (google drive, box.net etc)

                  It would be great if you could allow the user to login to dropbox, google drive, box.net, etc.. and allow us to pick a file to display on the browser from those online storage systems.

                  3 votes
                  Vote
                  Sign in
                  Check!
                  (thinking…)
                  Reset
                  or sign in with
                  • facebook
                  • google
                    Password icon
                    Forgot password?
                    Create a password
                    Signed in as (Sign out)
                    Close
                    Close
                    You have left! (?) (thinking…)
                    1 comment  ·  Admin →
                    under review  ·  AdminTed Pak (ChromoZoom dev, chromozoom) responded

                    Would it be possible to put these files in e.g. a Dropbox Public folder and use the public URLs? We’re not sure if this is more amenable than having ChromoZoom authenticate directly with all of these cloud services. With the Public URL method, there’s no concern that we would write to or delete files in the cloud. We will look into the APIs currently available, though.

                    Edit: having taken a look at https://www.dropbox.com/developers/chooser, this might not be that difficult to do at all.

                  • Add an Ensembl genes track

                    Since you have the UCSC and RefSeq genes already, why not add the Ensembl genes as well?
                    Also, I notice you're using hg19 as the assembly, but the GRC official name is GRCh37. How about labelling it as hg19/GRCh37 as UCSC does?
                    Nice work! It's fast, simple, and pretty!

                    4 votes
                    Vote
                    Sign in
                    Check!
                    (thinking…)
                    Reset
                    or sign in with
                    • facebook
                    • google
                      Password icon
                      Forgot password?
                      Create a password
                      Signed in as (Sign out)
                      Close
                      Close
                      You have left! (?) (thinking…)
                      0 comments  ·  Admin →

                    • If the browser's zoom is not 100%, mouse navigation breaks

                      If the browser's zoom is not 100%, interactions with the mouse do not work correctly.

                      1 vote
                      Vote
                      Sign in
                      Check!
                      (thinking…)
                      Reset
                      or sign in with
                      • facebook
                      • google
                        Password icon
                        Forgot password?
                        Create a password
                        Signed in as (Sign out)
                        Close
                        Close
                        You have left! (?) (thinking…)
                        0 comments  ·  Admin →

                      • Visualize list of genes and its position for certain region

                        see example: http://cccb.dfci.harvard.edu/cbgb/

                        2 votes
                        Vote
                        Sign in
                        Check!
                        (thinking…)
                        Reset
                        or sign in with
                        • facebook
                        • google
                          Password icon
                          Forgot password?
                          Create a password
                          Signed in as (Sign out)
                          Close
                          Close
                          You have left! (?) (thinking…)
                          0 comments  ·  Admin →

                        • Add S.cerevisiae genetic variation from the SGRP project

                          There is data on common variants available from the Sanger website as well as Liti et al. 2009.

                          1 vote
                          Vote
                          Sign in
                          Check!
                          (thinking…)
                          Reset
                          or sign in with
                          • facebook
                          • google
                            Password icon
                            Forgot password?
                            Create a password
                            Signed in as (Sign out)
                            Close
                            Close
                            You have left! (?) (thinking…)
                            1 comment  ·  Admin →
                          • Don't see your idea?

                          General

                          Feedback and Knowledge Base

                          (thinking…)